/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
 * Copyright by The HDF Group.                                               *
 * Copyright by the Board of Trustees of the University of Illinois.         *
 * All rights reserved.                                                      *
 *                                                                           *
 * This file is part of HDF5.  The full HDF5 copyright notice, including     *
 * terms governing use, modification, and redistribution, is contained in    *
 * the COPYING file, which can be found at the root of the source code       *
 * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
 * If you do not have access to either file, you may request a copy from     *
 * help@hdfgroup.org.                                                        *
 * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */

/****************/
/* Module Setup */
/****************/

#define H5D_PACKAGE		/*suppress error about including H5Dpkg	  */


/***********/
/* Headers */
/***********/
#include "H5private.h"		/* Generic Functions			*/
#include "H5Dpkg.h"		/* Datasets 				*/
#include "H5Eprivate.h"		/* Error handling		  	*/
#include "H5HLprivate.h"	/* Local heaps				*/


/****************/
/* Local Macros */
/****************/


/******************/
/* Local Typedefs */
/******************/


/********************/
/* Local Prototypes */
/********************/


/*********************/
/* Package Variables */
/*********************/


/*****************************/
/* Library Private Variables */
/*****************************/


/*******************/
/* Local Variables */
/*******************/



/*-------------------------------------------------------------------------
 * Function:	H5D__layout_set_io_ops
 *
 * Purpose:	Set the I/O operation function pointers for a dataset,
 *              according to the dataset's layout
 *
 * Return:	Non-negative on success/Negative on failure
 *
 * Programmer:	Quincey Koziol
 *		Thursday, March 20, 2008
 *
 *-------------------------------------------------------------------------
 */
herr_t
H5D__layout_set_io_ops(const H5D_t *dataset)
{
    herr_t ret_value = SUCCEED;		/* Return value */

    FUNC_ENTER_PACKAGE

    /* check args */
    HDassert(dataset);

    /* Set the I/O functions for each layout type */
    switch(dataset->shared->layout.type) {
        case H5D_CONTIGUOUS:
            if(dataset->shared->dcpl_cache.efl.nused > 0)
                dataset->shared->layout.ops = H5D_LOPS_EFL;
            else
                dataset->shared->layout.ops = H5D_LOPS_CONTIG;
            break;

        case H5D_CHUNKED:
            dataset->shared->layout.ops = H5D_LOPS_CHUNK;

            /* Set the chunk operations */
            /* (Only "B-tree" indexing type currently supported) */
            dataset->shared->layout.storage.u.chunk.ops = H5D_COPS_BTREE;
            break;

        case H5D_COMPACT:
            dataset->shared->layout.ops = H5D_LOPS_COMPACT;
            break;

        case H5D_LAYOUT_ERROR:
        case H5D_NLAYOUTS:
        default:
            HGOTO_ERROR(H5E_DATASET, H5E_UNSUPPORTED, FAIL, "unknown storage method")
    } /* end switch */ /*lint !e788 All appropriate cases are covered */

done:
    FUNC_LEAVE_NOAPI(ret_value)
} /* end H5D__layout_set_io_ops() */


/*-------------------------------------------------------------------------
 * Function:    H5D__layout_meta_size
 *
 * Purpose:     Returns the size of the raw message in bytes except raw data
 *              part for compact dataset.  This function doesn't take into
 *              account message alignment.
 *
 * Return:      Success:        Message data size in bytes
 *              Failure:        0
 *
 * Programmer:  Raymond Lu
 *              August 14, 2002
 *
 *-------------------------------------------------------------------------
 */
size_t
H5D__layout_meta_size(const H5F_t *f, const H5O_layout_t *layout, hbool_t include_compact_data)
{
    size_t                  ret_value;

    FUNC_ENTER_PACKAGE

    /* check args */
    HDassert(f);
    HDassert(layout);

    ret_value = 1 +                     /* Version number                       */
                1;                      /* layout class type                    */

    switch(layout->type) {
        case H5D_COMPACT:
            /* Size of raw data */
            ret_value += 2;
            if(include_compact_data)
                ret_value += layout->storage.u.compact.size;/* data for compact dataset             */
            break;

        case H5D_CONTIGUOUS:
            ret_value += H5F_SIZEOF_ADDR(f);    /* Address of data */
            ret_value += H5F_SIZEOF_SIZE(f);    /* Length of data */
            break;

        case H5D_CHUNKED:
            /* Number of dimensions (1 byte) */
            HDassert(layout->u.chunk.ndims > 0 && layout->u.chunk.ndims <= H5O_LAYOUT_NDIMS);
            ret_value++;

            /* Dimension sizes */
            ret_value += layout->u.chunk.ndims * 4;

            /* B-tree address */
            ret_value += H5F_SIZEOF_ADDR(f);    /* Address of data */
            break;

        case H5D_LAYOUT_ERROR:
        case H5D_NLAYOUTS:
        default:
            HGOTO_ERROR(H5E_OHDR, H5E_CANTENCODE, 0, "Invalid layout class")
    } /* end switch */

done:
    FUNC_LEAVE_NOAPI(ret_value)
} /* end H5D__layout_meta_size() */


/*-------------------------------------------------------------------------
 * Function:	H5D__layout_oh_create
 *
 * Purpose:	Create layout/pline/efl information for dataset
 *
 * Return:	Success:    SUCCEED
 *		Failure:    FAIL
 *
 * Programmer:	Quincey Koziol
 *		Monday, July 27, 2009
 *
 *-------------------------------------------------------------------------
 */
herr_t
H5D__layout_oh_create(H5F_t *file, hid_t dxpl_id, H5O_t *oh, H5D_t *dset,
    hid_t dapl_id)
{
    H5O_layout_t        *layout;         /* Dataset's layout information */
    const H5O_fill_t	*fill_prop;     /* Pointer to dataset's fill value information */
    hbool_t             layout_init = FALSE;    /* Flag to indicate that chunk information was initialized */
    herr_t ret_value = SUCCEED;         /* Return value */

    FUNC_ENTER_PACKAGE

    /* Sanity checking */
    HDassert(file);
    HDassert(oh);
    HDassert(dset);

    /* Set some local variables, for convenience */
    layout = &dset->shared->layout;
    fill_prop = &dset->shared->dcpl_cache.fill;

    /* Update the filters message, if this is a chunked dataset */
    if(layout->type == H5D_CHUNKED) {
        H5O_pline_t     *pline;         /* Dataset's I/O pipeline information */

        pline = &dset->shared->dcpl_cache.pline;
        if(pline->nused > 0 && H5O_msg_append_oh(file, dxpl_id, oh, H5O_PLINE_ID, H5O_MSG_FLAG_CONSTANT, 0, pline) < 0)
            HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to update filter header message")
    } /* end if */

    /* Initialize the layout information for the new dataset */
    if(dset->shared->layout.ops->init && (dset->shared->layout.ops->init)(file, dxpl_id, dset, dapl_id) < 0)
        HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to initialize layout information")

    /* Indicate that the layout information was initialized */
    layout_init = TRUE;

    /*
     * Allocate storage if space allocate time is early; otherwise delay
     * allocation until later.
     */
    if(fill_prop->alloc_time == H5D_ALLOC_TIME_EARLY)
        if(H5D__alloc_storage(dset, dxpl_id, H5D_ALLOC_CREATE, FALSE, NULL) < 0)
            HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to initialize storage")

    /* Update external storage message, if it's used */
    if(dset->shared->dcpl_cache.efl.nused > 0) {
        H5O_efl_t *efl = &dset->shared->dcpl_cache.efl; /* Dataset's external file list */
        H5HL_t *heap;                           /* Pointer to local heap for EFL file names */
        size_t heap_size = H5HL_ALIGN(1);
        size_t u;

        /* Determine size of heap needed to stored the file names */
        for(u = 0; u < efl->nused; ++u)
            heap_size += H5HL_ALIGN(HDstrlen(efl->slot[u].name) + 1);

        /* Create the heap for the EFL file names */
        if(H5HL_create(file, dxpl_id, heap_size, &efl->heap_addr/*out*/) < 0)
            HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to create EFL file name heap")

        /* Pin the heap down in memory */
        if(NULL == (heap = H5HL_protect(file, dxpl_id, efl->heap_addr, H5AC_WRITE)))
            HGOTO_ERROR(H5E_DATASET, H5E_CANTPROTECT, FAIL, "unable to protect EFL file name heap")

        /* Insert "empty" name first */
        if((size_t)(-1) == H5HL_insert(file, dxpl_id, heap, (size_t)1, "")) {
            H5HL_unprotect(heap);
            HGOTO_ERROR(H5E_DATASET, H5E_CANTINSERT, FAIL, "unable to insert file name into heap")
        } /* end if */

        for(u = 0; u < efl->nused; ++u) {
            size_t offset;      /* Offset of file name in heap */

            /* Insert file name into heap */
            if((size_t)(-1) == (offset = H5HL_insert(file, dxpl_id, heap,
                        HDstrlen(efl->slot[u].name) + 1, efl->slot[u].name))) {
                H5HL_unprotect(heap);
                HGOTO_ERROR(H5E_DATASET, H5E_CANTINSERT, FAIL, "unable to insert file name into heap")
            } /* end if */

            /* Store EFL file name offset */
            HDassert(0 == efl->slot[u].name_offset);
            efl->slot[u].name_offset = offset;
        } /* end for */

        /* Release the heap */
        if(H5HL_unprotect(heap) < 0)
            HGOTO_ERROR(H5E_DATASET, H5E_CANTUNPROTECT, FAIL, "unable to unprotect EFL file name heap")
        heap = NULL;

        /* Insert EFL message into dataset object header */
        if(H5O_msg_append_oh(file, dxpl_id, oh, H5O_EFL_ID, H5O_MSG_FLAG_CONSTANT, 0, efl) < 0)
            HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to update external file list message")
    } /* end if */

    /* Create layout message */
    /* (Don't make layout message constant unless allocation time is early, since space may not be allocated) */
    /* (Note: this is relying on H5D__alloc_storage not calling H5O_msg_write during dataset creation) */
    if(H5O_msg_append_oh(file, dxpl_id, oh, H5O_LAYOUT_ID, ((fill_prop->alloc_time == H5D_ALLOC_TIME_EARLY && H5D_COMPACT != layout->type) ? H5O_MSG_FLAG_CONSTANT : 0), 0, layout) < 0)
         HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to update layout")

done:
    /* Error cleanup */
    if(ret_value < 0) {
        if(dset->shared->layout.type == H5D_CHUNKED && layout_init) {
            if(H5D__chunk_dest(file, dxpl_id, dset) < 0)
                HDONE_ERROR(H5E_DATASET, H5E_CANTRELEASE, FAIL, "unable to destroy chunk cache")
        } /* end if */
    } /* end if */

    FUNC_LEAVE_NOAPI(ret_value)
} /* end H5D__layout_oh_create() */


/*-------------------------------------------------------------------------
 * Function:	H5D__layout_oh_read
 *
 * Purpose:	Read layout/pline/efl information for dataset
 *
 * Return:	Success:    SUCCEED
 *		Failure:    FAIL
 *
 * Programmer:	Quincey Koziol
 *		Monday, July 27, 2009
 *
 *-------------------------------------------------------------------------
 */
herr_t
H5D__layout_oh_read(H5D_t *dataset, hid_t dxpl_id, hid_t dapl_id, H5P_genplist_t *plist)
{
    htri_t msg_exists;                  /* Whether a particular type of message exists */
    herr_t ret_value = SUCCEED;         /* Return value */

    FUNC_ENTER_PACKAGE

    /* Sanity checking */
    HDassert(dataset);
    HDassert(plist);

    /* Get the optional filters message */
    if((msg_exists = H5O_msg_exists(&(dataset->oloc), H5O_PLINE_ID, dxpl_id)) < 0)
        HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't check if message exists")
    if(msg_exists) {
        /* Retrieve the I/O pipeline message */
        if(NULL == H5O_msg_read(&(dataset->oloc), H5O_PLINE_ID, &dataset->shared->dcpl_cache.pline, dxpl_id))
            HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't retrieve message")

        /* Set the I/O pipeline info in the property list */
        if(H5P_set(plist, H5O_CRT_PIPELINE_NAME, &dataset->shared->dcpl_cache.pline) < 0)
            HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set pipeline")
    } /* end if */

    /*
     * Get the raw data layout info.  It's actually stored in two locations:
     * the storage message of the dataset (dataset->storage) and certain
     * values are copied to the dataset create plist so the user can query
     * them.
     */
    if(NULL == H5O_msg_read(&(dataset->oloc), H5O_LAYOUT_ID, &(dataset->shared->layout), dxpl_id))
        HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to read data layout message")

    /* Check for external file list message (which might not exist) */
    if((msg_exists = H5O_msg_exists(&(dataset->oloc), H5O_EFL_ID, dxpl_id)) < 0)
        HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't check if message exists")
    if(msg_exists) {
        /* Retrieve the EFL  message */
        if(NULL == H5O_msg_read(&(dataset->oloc), H5O_EFL_ID, &dataset->shared->dcpl_cache.efl, dxpl_id))
            HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't retrieve message")

        /* Set the EFL info in the property list */
        if(H5P_set(plist, H5D_CRT_EXT_FILE_LIST_NAME, &dataset->shared->dcpl_cache.efl) < 0)
            HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set external file list")

        /* Set the dataset's I/O operations */
        dataset->shared->layout.ops = H5D_LOPS_EFL;
    } /* end if */

    /* Sanity check that the layout operations are set up */
    HDassert(dataset->shared->layout.ops);

    /* Adjust chunk dimensions to omit datatype size (in last dimension) for creation property */
    if(H5D_CHUNKED == dataset->shared->layout.type)
        dataset->shared->layout.u.chunk.ndims--;
    /* Copy layout to the DCPL */
    if(H5P_set(plist, H5D_CRT_LAYOUT_NAME, &dataset->shared->layout) < 0)
        HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set layout")
    /* Adjust chunk dimensions back again (*sigh*) */
    if(H5D_CHUNKED == dataset->shared->layout.type)
        dataset->shared->layout.u.chunk.ndims++;

    switch(dataset->shared->layout.type) {
        case H5D_CONTIGUOUS:
        {
            hsize_t tmp_size;                   /* Temporary holder for raw data size */
            size_t tmp_sieve_buf_size;          /* Temporary holder for sieve buffer size */

            /* Compute the size of the contiguous storage for versions of the
             * layout message less than version 3 because versions 1 & 2 would
             * truncate the dimension sizes to 32-bits of information. - QAK 5/26/04
             */
            if(dataset->shared->layout.version < 3) {
                hssize_t snelmts;                   /* Temporary holder for number of elements in dataspace */
                hsize_t nelmts;                     /* Number of elements in dataspace */
                size_t dt_size;                     /* Size of datatype */

                /* Retrieve the number of elements in the dataspace */
                if((snelmts = H5S_GET_EXTENT_NPOINTS(dataset->shared->space)) < 0)
                    HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to retrieve number of elements in dataspace")
                nelmts = (hsize_t)snelmts;

                /* Get the datatype's size */
                if(0 == (dt_size = H5T_GET_SIZE(dataset->shared->type)))
                    HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to retrieve size of datatype")

                /* Compute the size of the dataset's contiguous storage */
                tmp_size = nelmts * dt_size;

                /* Check for overflow during multiplication */
                if(nelmts != (tmp_size / dt_size))
                    HGOTO_ERROR(H5E_DATASET, H5E_OVERFLOW, FAIL, "size of dataset's storage overflowed")

                /* Assign the dataset's contiguous storage size */
                dataset->shared->layout.storage.u.contig.size = tmp_size;
            } else
                tmp_size = dataset->shared->layout.storage.u.contig.size;

	    /* Get the sieve buffer size for the file */
	    tmp_sieve_buf_size = H5F_SIEVE_BUF_SIZE(dataset->oloc.file);

	    /* Adjust the sieve buffer size to the smaller one between the dataset size and the buffer size
	     * from the file access property.  (SLU - 2012/3/30) */
	    if(tmp_size < tmp_sieve_buf_size)
		dataset->shared->cache.contig.sieve_buf_size = tmp_size;
	    else
		dataset->shared->cache.contig.sieve_buf_size = tmp_sieve_buf_size;
        }
            break;

        case H5D_CHUNKED:
            /* Initialize the chunk cache for the dataset */
            if(H5D__chunk_init(dataset->oloc.file, dxpl_id, dataset, dapl_id) < 0)
                HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't initialize chunk cache")
            break;

        case H5D_COMPACT:
            break;

        case H5D_LAYOUT_ERROR:
        case H5D_NLAYOUTS:
        default:
            HGOTO_ERROR(H5E_DATASET, H5E_UNSUPPORTED, FAIL, "unknown storage method")
    } /* end switch */ /*lint !e788 All appropriate cases are covered */

done:
    FUNC_LEAVE_NOAPI(ret_value)
} /* end H5D__layout_oh_read() */


/*-------------------------------------------------------------------------
 * Function:	H5D__layout_oh_write
 *
 * Purpose:	Write layout/pline/efl information for dataset
 *
 * Return:	Success:    SUCCEED
 *		Failure:    FAIL
 *
 * Programmer:	Quincey Koziol
 *		Monday, July 27, 2009
 *
 *-------------------------------------------------------------------------
 */
herr_t
H5D__layout_oh_write(H5D_t *dataset, hid_t dxpl_id, H5O_t *oh, unsigned update_flags)
{
    herr_t ret_value = SUCCEED;         /* Return value */

    FUNC_ENTER_PACKAGE

    /* Sanity checking */
    HDassert(dataset);
    HDassert(oh);

    /* Write the layout message to the dataset's header */
    if(H5O_msg_write_oh(dataset->oloc.file, dxpl_id, oh, H5O_LAYOUT_ID, H5O_MSG_FLAG_CONSTANT, update_flags, &dataset->shared->layout) < 0)
        HGOTO_ERROR(H5E_DATASET, H5E_WRITEERROR, FAIL, "unable to update layout message")

done:
    FUNC_LEAVE_NOAPI(ret_value)
} /* end H5D__layout_oh_write() */

